STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dret_0393PFAM: glycosyl transferase group 1; KEGG: dal:Dalk_1334 glycosyl transferase group 1. (403 aa)    
Predicted Functional Partners:
Dret_0392
PFAM: Heparinase II/III family protein; KEGG: dal:Dalk_1335 heparinase II/III family protein.
     0.970
Dret_0388
PFAM: oxidoreductase domain protein; Semialdehyde dehydrogenase NAD - binding; Alcohol dehydrogenase zinc- binding domain protein; KEGG: vvy:VV0357 putatve zinc-binding dehydrogenase.
 
  
 0.922
Dret_0395
KEGG: dal:Dalk_1333 UDP-N-acetylglucosamine 2- epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
 
  
 0.822
Dret_0389
Hypothetical protein.
       0.773
Dret_0390
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: tau:Tola_2854 transcriptional regulator, XRE family.
       0.773
Dret_0391
Hypothetical protein; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA.
       0.773
Dret_0387
Coenzyme F390 synthetase-like protein; KEGG: vha:VIBHAR_00696 hypothetical protein.
 
     0.695
Dret_0386
KEGG: scl:sce7845 hypothetical protein.
 
     0.664
Dret_0384
PFAM: glycosyl transferase group 1; KEGG: geo:Geob_2133 glycosyl transferase group 1.
  
     0.515
Your Current Organism:
Desulfohalobium retbaense
NCBI taxonomy Id: 485915
Other names: D. retbaense DSM 5692, Desulfohalobium retbaense DSM 5692, Desulfohalobium retbaense str. DSM 5692, Desulfohalobium retbaense strain DSM 5692
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