STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dret_0476PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dps:DP0989 amino acid permease, ATP-binding protein. (259 aa)    
Predicted Functional Partners:
Dret_0475
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_3071 amino acid ABC transporter permease.
  0.995
Dret_0478
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dvm:DvMF_2684 binding-protein-dependent transport systems inner membrane component.
  0.991
Dret_1293
KEGG: gbm:Gbem_0984 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide repeat.
   0.985
Dret_1092
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dvm:DvMF_1919 polar amino acid ABC transporter, inner membrane subunit.
 
   0.969
Dret_1344
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dvm:DvMF_0861 polar amino acid ABC transporter, inner membrane subunit.
   0.948
Dret_2491
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dvl:Dvul_2021 polar amino acid ABC transporter, inner membrane subunit.
   0.908
Dret_2155
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dvl:Dvul_0919 polar amino acid ABC transporter, inner membrane subunit.
 
 0.904
Dret_0975
PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: dma:DMR_20910 putative ABC transporter.
 
    
0.903
Dret_1135
PFAM: inner-membrane translocator; KEGG: gbm:Gbem_2187 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
    
 0.898
Dret_1359
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dal:Dalk_1532 binding-protein-dependent transport systems inner membrane component.
 
    
 0.895
Your Current Organism:
Desulfohalobium retbaense
NCBI taxonomy Id: 485915
Other names: D. retbaense DSM 5692, Desulfohalobium retbaense DSM 5692, Desulfohalobium retbaense str. DSM 5692, Desulfohalobium retbaense strain DSM 5692
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