STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dret_0566PFAM: transglutaminase family protein cysteine peptidase BTLCP; KEGG: dde:Dde_1420 hypothetical protein. (241 aa)    
Predicted Functional Partners:
Dret_0567
KEGG: dde:Dde_1421 putative PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold-4 domain protein; metal-dependent phosphohydrolase HD sub domain; PAS fold domain protein; SMART: PAS domain containing protein.
 
   
 0.943
Dret_0565
TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: dvl:Dvul_1976 HlyD family type I secretion membrane fusion protein.
 
  
 0.942
Dret_0564
KEGG: dde:Dde_1418 ATPase; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; peptidase C39 bacteriocin processing; ABC transporter transmembrane region; SMART: AAA ATPase.
 
  
 0.896
Dret_0562
TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: dvl:Dvul_1978 TolC family type I secretion outer membrane protein.
 
   
 0.790
Dret_2442
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); KEGG: dma:DMR_02070 putative response regulator receiver protein; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein.
 
 
 
 0.693
Dret_0176
Diguanylate cyclase/phosphodiesterase; PFAM: EAL domain protein; GGDEF domain containing protein; CBS domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein; KEGG: dvm:DvMF_0617 diguanylate cyclase/phosphodiesterase.
 
 
 
 0.654
Dret_1290
TIGRFAM: pseudouridine synthase Rlu family protein, TIGR01621; PFAM: pseudouridine synthase; KEGG: slo:Shew_0099 pseudouridine synthase Rlu family protein.
  
     0.515
Dret_0563
TIGRFAM: type 1 secretion C-terminal target domain; outer membrane adhesin like proteiin; KEGG: cja:CJA_1396 putative hemolysin.
 
   
 0.504
Dret_0071
KEGG: dps:DP0488 DctQ (C4-dicarboxylate permease, small subunit).
  
     0.411
Your Current Organism:
Desulfohalobium retbaense
NCBI taxonomy Id: 485915
Other names: D. retbaense DSM 5692, Desulfohalobium retbaense DSM 5692, Desulfohalobium retbaense str. DSM 5692, Desulfohalobium retbaense strain DSM 5692
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