STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dret_0705PFAM: glycosyl transferase group 1; KEGG: bja:bll6635 glycosyl transferase. (345 aa)    
Predicted Functional Partners:
Dret_0704
PFAM: pyruvate phosphate dikinase PEP/pyruvate- binding; PEP-utilising protein mobile region; KEGG: dal:Dalk_5266 pyruvate, water dikinase.
       0.773
Dret_1693
Nucleotide sugar dehydrogenase; KEGG: dma:DMR_27530 UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP- glucose/GDP-mannose dehydrogenase dimerisation; UDP- glucose/GDP-mannose dehydrogenase.
 
  
 0.608
Dret_0908
PFAM: ROSMUCR transcriptional regulator; KEGG: dde:Dde_0303 MucR family transcriptional regulator.
  
     0.443
Dret_0703
Transcriptional regulator, HxlR family; PFAM: helix-turn-helix HxlR type; KEGG: dde:Dde_1352 putative transcriptional regulator.
  
    0.417
ftsH
ATP-dependent metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
       0.408
Dret_2166
PFAM: ROSMUCR transcriptional regulator; KEGG: dma:DMR_34370 hypothetical protein.
  
     0.407
Your Current Organism:
Desulfohalobium retbaense
NCBI taxonomy Id: 485915
Other names: D. retbaense DSM 5692, Desulfohalobium retbaense DSM 5692, Desulfohalobium retbaense str. DSM 5692, Desulfohalobium retbaense strain DSM 5692
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.