STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dret_0736KEGG: dvl:Dvul_0727 hypothetical protein. (413 aa)    
Predicted Functional Partners:
Dret_0302
KEGG: dvl:Dvul_2167 hypothetical protein.
  
     0.679
Dret_0993
KEGG: dde:Dde_1466 putative lipoprotein.
  
     0.650
Dret_1556
Putative phytochrome sensor protein; PFAM: GAF domain protein; SMART: GAF domain protein; KEGG: dde:Dde_1994 hypothetical protein.
  
     0.633
Dret_0691
PFAM: pyruvate phosphate dikinase PEP/pyruvate- binding; PEP-utilising protein mobile region; PEP- utilizing protein; KEGG: dde:Dde_2080 phosphoenolpyruvate synthase.
  
     0.626
Dret_1951
TIGRFAM: MJ0042 family finger-like protein; PFAM: Protein of unknown function DUF2143; KEGG: dvu:DVU0859 hypothetical protein.
  
     0.598
Dret_0012
PFAM: Fe-S cluster domain protein; KEGG: dvl:Dvul_2363 molybdopterin-guanine dinucleotide biosynthesis MobB region.
  
   
 0.479
Dret_1075
TIGRFAM: metal dependent phophohydrolase; KEGG: dde:Dde_0365 metal dependent phosphohydrolase.
  
     0.474
Dret_2173
TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: dde:Dde_2651 MATE efflux family protein.
 
     0.470
Dret_1101
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dvm:DvMF_2379 ABC transporter related.
  
    0.456
Dret_1865
TIGRFAM: acetylornithine deacetylase or succinyl- diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: dma:DMR_26040 peptidase M20 family protein.
  
     0.447
Your Current Organism:
Desulfohalobium retbaense
NCBI taxonomy Id: 485915
Other names: D. retbaense DSM 5692, Desulfohalobium retbaense DSM 5692, Desulfohalobium retbaense str. DSM 5692, Desulfohalobium retbaense strain DSM 5692
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