STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
selAL-seryl-tRNA selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis. (472 aa)    
Predicted Functional Partners:
Dret_2036
TIGRFAM: selenide, water dikinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: dma:DMR_20900 selenide, water dikinase.
 
  
 0.983
Dret_0762
TIGRFAM: selenocysteine-specific translation elongation factor; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; Elongation factor SelB winged helix 3; Elongation factor SelB winged helix 2; elongation factor Tu domain 2 protein; KEGG: dvl:Dvul_2441 selenocysteine-specific translation elongation factor.
  
 0.929
serS
seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
     
 0.923
Dret_0807
TIGRFAM: selenium metabolism protein YedF; PFAM: SirA family protein; KEGG: dvm:DvMF_0368 hypothetical protein; Belongs to the sulfur carrier protein TusA family.
 
  
 0.797
Dret_0226
Contains selenocysteine; TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; Twin-arginine translocation pathway, signal sequence; KEGG: dvm:DvMF_1217 formate dehydrogenase, alpha subunit.
 
  
 0.735
Dret_0759
KEGG: dds:Ddes_1739 FolC bifunctional protein; TIGRFAM: FolC bifunctional protein; PFAM: Mur ligase middle domain protein; Belongs to the folylpolyglutamate synthase family.
       0.721
Dret_0227
KEGG: dde:Dde_0718 formate dehydrogenase, beta subunit, putative.
 
   
 0.533
Dret_0950
KEGG: ank:AnaeK_1209 hypothetical protein.
  
   
 0.529
Dret_0173
PFAM: thiamineS protein; KEGG: dma:DMR_26290 hypothetical protein.
    
   0.487
Dret_0761
PFAM: peptidase M18 aminopeptidase I; peptidase M20; KEGG: dde:Dde_3061 putative aminopeptidase 1.
       0.471
Your Current Organism:
Desulfohalobium retbaense
NCBI taxonomy Id: 485915
Other names: D. retbaense DSM 5692, Desulfohalobium retbaense DSM 5692, Desulfohalobium retbaense str. DSM 5692, Desulfohalobium retbaense strain DSM 5692
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