STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dret_0975PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: dma:DMR_20910 putative ABC transporter. (585 aa)    
Predicted Functional Partners:
Dret_0476
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dps:DP0989 amino acid permease, ATP-binding protein.
 
    
0.903
Dret_0677
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sat:SYN_00410 ABC-type transport system, ATP- binding component.
     
0.889
Dret_0564
KEGG: dde:Dde_1418 ATPase; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; peptidase C39 bacteriocin processing; ABC transporter transmembrane region; SMART: AAA ATPase.
 
 
 
0.755
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.690
Dret_1819
Molybdate ABC transporter, ATPase subunit; KEGG: dat:HRM2_01680 putative molybdenum ABC-type transporter, ATP-binding protein; TIGRFAM: molybdate ABC transporter, ATPase subunit; PFAM: ABC transporter related; TOBE domain protein; SMART: AAA ATPase.
 
   
0.598
Dret_0676
PFAM: protein of unknown function DUF140; KEGG: sat:SYN_00411 ABC-type transport system involved in resistance to organic solvents, permease component.
  
 
 0.565
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 
 0.539
Dret_0974
PFAM: protein of unknown function DUF1614; KEGG: sfu:Sfum_0878 protein of unknown function DUF1614.
       0.533
Dret_1321
TIGRFAM: deoxyribodipyrimidine photolyase; PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: gsu:GSU2829 deoxyribodipyrimidine photolyase, putative.
   
 
 0.521
serS
seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
 
 
 
 0.495
Your Current Organism:
Desulfohalobium retbaense
NCBI taxonomy Id: 485915
Other names: D. retbaense DSM 5692, Desulfohalobium retbaense DSM 5692, Desulfohalobium retbaense str. DSM 5692, Desulfohalobium retbaense strain DSM 5692
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.