STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dret_1018Hypothetical protein; KEGG: gbm:Gbem_2047 type IV pilus assembly PilZ. (657 aa)    
Predicted Functional Partners:
Dret_1019
PFAM: metal-dependent phosphohydrolase HD sub domain; GAF domain protein; SMART: metal-dependent phosphohydrolase HD region; GAF domain protein; KEGG: gbm:Gbem_2046 metal dependent phosphohydrolase.
     
 0.487
Dret_0082
KEGG: dal:Dalk_0107 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; extracellular solute-binding protein family 3; PAS fold-3 domain protein; response regulator receiver; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: extracellular solute-binding protein family 3; PAC repeat-containing protein; histidine kinase A domain protein; response regulator receiver; PAS domain containing protein; ATP-binding region ATPase domain protein.
  
 
 0.485
Dret_1017
Hypothetical protein.
       0.464
Dret_2369
KEGG: mca:MCA1204 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; GAF domain protein; PAS fold- 3 domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; GAF domain protein; PAS domain containing protein; ATP- binding region ATPase domain protein.
  
 
 0.454
Dret_0644
KEGG: dma:DMR_41530 putative transposase orf1 for insertion sequence element.
  
 
 0.446
Dret_0927
KEGG: dma:DMR_41530 putative transposase orf1 for insertion sequence element.
  
 
 0.446
Dret_1648
KEGG: dol:Dole_3272 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; GAF domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; PAC repeat-containing protein; histidine kinase A domain protein; GAF domain protein; PAS domain containing protein.
  
  
 0.421
Your Current Organism:
Desulfohalobium retbaense
NCBI taxonomy Id: 485915
Other names: D. retbaense DSM 5692, Desulfohalobium retbaense DSM 5692, Desulfohalobium retbaense str. DSM 5692, Desulfohalobium retbaense strain DSM 5692
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.