STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dret_1056PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: dde:Dde_3306 glycine/betaine/L-proline ABC transporter, periplasmic-binding protein. (305 aa)    
Predicted Functional Partners:
Dret_2272
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dol:Dole_2764 binding-protein-dependent transport systems inner membrane component.
 
 0.998
Dret_2273
KEGG: dol:Dole_2765 glycine betaine/L-proline ABC transporter, ATPase subunit; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter related; CBS domain containing protein; SMART: AAA ATPase.
 0.988
Dret_1852
PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: dde:Dde_0146 putative glycine betaine/L- proline ABC transporter, solute-binding protein.
  
  
 
0.855
Dret_0343
PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: dde:Dde_0145 putative glycine betaine/L- proline ABC transporter, solute-binding protein.
  
  
 
0.854
Dret_0128
PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: pag:PLES_57731 putative glycine betaine/L- proline ABC transporter, periplasmic component.
  
  
 
0.853
Dret_0351
PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: csa:Csal_2886 substrate-binding region of ABC- type glycine betaine transport system.
  
  
 
0.847
Dret_1472
PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: dol:Dole_2763 substrate-binding region of ABC- type glycine betaine transport system.
  
  
 
0.813
Dret_0905
PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: dol:Dole_2763 substrate-binding region of ABC- type glycine betaine transport system.
  
  
 
0.811
Dret_2271
PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: dol:Dole_2763 substrate-binding region of ABC- type glycine betaine transport system.
  
  
 
0.806
Dret_1055
TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: dde:Dde_3305 choline/carnitine/betaine transport; Belongs to the BCCT transporter (TC 2.A.15) family.
     
 0.616
Your Current Organism:
Desulfohalobium retbaense
NCBI taxonomy Id: 485915
Other names: D. retbaense DSM 5692, Desulfohalobium retbaense DSM 5692, Desulfohalobium retbaense str. DSM 5692, Desulfohalobium retbaense strain DSM 5692
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