Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Dret_1237PFAM: beta-lactamase domain protein; KEGG: dat:HRM2_46910 metallo-beta-lactamase family protein. (248 aa)    
Predicted Functional Partners:
Dret_2254
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SMART: Rhodanese domain protein; KEGG: ppd:Ppro_1974 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
  
 0.701
Dret_0871
PFAM: UspA domain protein; KEGG: dol:Dole_2256 UspA domain-containing protein.
  
     0.544
Dret_2431
KEGG: dvu:DVU0400 hypothetical protein.
  
     0.531
Dret_1791
PFAM: protein of unknown function DUF1566; KEGG: dde:Dde_1619 hypothetical protein.
  
    0.502
Dret_0415
PFAM: UspA domain protein; KEGG: dol:Dole_2256 UspA domain-containing protein.
  
     0.497
Dret_1738
PFAM: protein of unknown function DUF181; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide repeat; KEGG: dma:DMR_15900 hypothetical protein.
 
    0.473
Dret_0868
KEGG: dvl:Dvul_2720 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; PAS fold-4 domain protein; ATP-binding region ATPase domain protein; SMART: response regulator receiver; ATP-binding region ATPase domain protein.
 
  
 0.469
Dret_0878
KEGG: dvm:DvMF_2548 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; PAS fold-3 domain protein; PAS fold domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein.
  
     0.447
qmoC
KEGG: dma:DMR_05430 quinone-interacting membrane- bound oxidoreductase complex subunit C.
  
     0.445
Dret_2382
PFAM: Cupin 2 conserved barrel domain protein; KEGG: dal:Dalk_2029 cupin 2 conserved barrel domain protein.
  
     0.444
Your Current Organism:
Desulfohalobium retbaense
NCBI taxonomy Id: 485915
Other names: D. retbaense DSM 5692, Desulfohalobium retbaense DSM 5692, Desulfohalobium retbaense str. DSM 5692, Desulfohalobium retbaense strain DSM 5692
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