STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dret_1237PFAM: beta-lactamase domain protein; KEGG: dat:HRM2_46910 metallo-beta-lactamase family protein. (248 aa)    
Predicted Functional Partners:
Dret_2254
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SMART: Rhodanese domain protein; KEGG: ppd:Ppro_1974 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
  
 0.838
Dret_0871
PFAM: UspA domain protein; KEGG: dol:Dole_2256 UspA domain-containing protein.
  
    0.549
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
  
 
 0.541
Dret_2431
KEGG: dvu:DVU0400 hypothetical protein.
  
     0.531
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
    
 
 0.509
Dret_0415
PFAM: UspA domain protein; KEGG: dol:Dole_2256 UspA domain-containing protein.
  
    0.503
Dret_1791
PFAM: protein of unknown function DUF1566; KEGG: dde:Dde_1619 hypothetical protein.
  
    0.501
ybeY
Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
  
 
 0.480
Dret_1738
PFAM: protein of unknown function DUF181; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide repeat; KEGG: dma:DMR_15900 hypothetical protein.
 
    0.478
Dret_0830
TIGRFAM: cysteine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; Cysteinyl-tRNA synthetase class Ia; KEGG: dma:DMR_30710 cysteine synthase B.
 
  
 0.477
Your Current Organism:
Desulfohalobium retbaense
NCBI taxonomy Id: 485915
Other names: D. retbaense DSM 5692, Desulfohalobium retbaense DSM 5692, Desulfohalobium retbaense str. DSM 5692, Desulfohalobium retbaense strain DSM 5692
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.