STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dret_1305KEGG: dal:Dalk_4628 hypothetical protein. (352 aa)    
Predicted Functional Partners:
Dret_1304
PFAM: protein of unknown function DUF362; KEGG: dde:Dde_3247 hypothetical protein.
       0.774
Dret_2440
PFAM: protein of unknown function DUF81; KEGG: dat:HRM2_12110 hypothetical protein.
  
     0.705
Dret_1303
(NiFe) hydrogenase maturation protein HypF; Involved in the maturation of [NiFe] hydrogenases. Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of [NiFe]-hydrogenases. HypF functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide.
       0.655
Dret_1194
PFAM: Auxin Efflux Carrier; KEGG: dat:HRM2_47110 putative permease.
 
     0.582
Dret_1306
KEGG: ppd:Ppro_3008 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAS domain containing protein; histidine kinase HAMP region domain protein.
  
    0.542
Dret_1308
PFAM: Rhodanese domain protein; Rubrerythrin; SMART: Rhodanese domain protein; KEGG: dde:Dde_3248 rhodanese-like protein.
       0.539
Dret_1307
PFAM: Extracellular ligand-binding receptor; KEGG: dma:DMR_02650 hypothetical protein.
       0.538
Dret_0055
PFAM: sulphate transporter; KEGG: dat:HRM2_13280 SulP1.
  
    0.460
Dret_0099
PFAM: Dual specificity protein phosphatase; SMART: Dual specificity phosphatase, subgroup, catalytic domain; KEGG: dde:Dde_0605 protein tyrosine phosphatase / dual specificity protein phosphatase.
  
    0.457
Dret_1309
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sfu:Sfum_0240 methyltransferase type 11.
       0.418
Your Current Organism:
Desulfohalobium retbaense
NCBI taxonomy Id: 485915
Other names: D. retbaense DSM 5692, Desulfohalobium retbaense DSM 5692, Desulfohalobium retbaense str. DSM 5692, Desulfohalobium retbaense strain DSM 5692
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