STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dret_1436PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bph:Bphy_0987 ABC transporter related. (221 aa)    
Predicted Functional Partners:
Dret_1437
PFAM: conserved hypothetical protein; KEGG: bmj:BMULJ_01745 putative ABC transport system permease protein.
  
 0.985
Dret_1435
PFAM: Cupin 2 conserved barrel domain protein; Cupin domain protein; KEGG: tdn:Suden_0432 cupin region.
       0.465
Dret_0772
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: dvu:DVU0283 AhpF family protein/thioredoxin reductase.
  
     0.452
Dret_1438
PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: hch:HCH_00672 FOG: CheY-like receiver.
       0.447
Dret_1439
PFAM: CheC domain protein; KEGG: ppd:Ppro_0086 CheC, inhibitor of MCP methylation.
       0.444
rpsE
Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
  
     0.437
Dret_1907
Thioredoxin-disulfide reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dvl:Dvul_1324 thioredoxin reductase.
  
     0.420
rplN
Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
  
     0.414
Your Current Organism:
Desulfohalobium retbaense
NCBI taxonomy Id: 485915
Other names: D. retbaense DSM 5692, Desulfohalobium retbaense DSM 5692, Desulfohalobium retbaense str. DSM 5692, Desulfohalobium retbaense strain DSM 5692
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