STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dret_1440KEGG: pha:PSHAa1211 sensory box/GGDEF protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; SMART: GGDEF domain containing protein; PAS domain containing protein. (315 aa)    
Predicted Functional Partners:
Dret_0825
PFAM: Stage II sporulation E family protein; response regulator receiver; SMART: protein phosphatase 2C domain protein; response regulator receiver; KEGG: sat:SYN_00230 response regulator receiver domain-containing protein.
 
 
 0.969
Dret_2370
PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: response regulator receiver; metal-dependent phosphohydrolase HD region; KEGG: dma:DMR_29640 response regulator receiver protein.
 
 0.955
Dret_2178
KEGG: dde:Dde_3077 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region.
 
 0.930
Dret_2369
KEGG: mca:MCA1204 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; GAF domain protein; PAS fold- 3 domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; GAF domain protein; PAS domain containing protein; ATP- binding region ATPase domain protein.
 
 0.926
Dret_0887
PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; GAF domain protein; Metal- dependent hydrolase HDOD; SMART: response regulator receiver; metal-dependent phosphohydrolase HD region; GAF domain protein; KEGG: scl:sce2546 putative regulatory protein.
 
 0.915
Dret_1648
KEGG: dol:Dole_3272 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; GAF domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; PAC repeat-containing protein; histidine kinase A domain protein; GAF domain protein; PAS domain containing protein.
 
 
 0.888
Dret_0082
KEGG: dal:Dalk_0107 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; extracellular solute-binding protein family 3; PAS fold-3 domain protein; response regulator receiver; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: extracellular solute-binding protein family 3; PAC repeat-containing protein; histidine kinase A domain protein; response regulator receiver; PAS domain containing protein; ATP-binding region ATPase domain protein.
 
 
 0.874
Dret_1184
KEGG: mfa:Mfla_1183 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; response regulator receiver; SMART: EAL domain protein; GGDEF domain containing protein; response regulator receiver; PAS domain containing protein.
 
0.874
Dret_0176
Diguanylate cyclase/phosphodiesterase; PFAM: EAL domain protein; GGDEF domain containing protein; CBS domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein; KEGG: dvm:DvMF_0617 diguanylate cyclase/phosphodiesterase.
 
 0.863
Dret_1019
PFAM: metal-dependent phosphohydrolase HD sub domain; GAF domain protein; SMART: metal-dependent phosphohydrolase HD region; GAF domain protein; KEGG: gbm:Gbem_2046 metal dependent phosphohydrolase.
 
 0.855
Your Current Organism:
Desulfohalobium retbaense
NCBI taxonomy Id: 485915
Other names: D. retbaense DSM 5692, Desulfohalobium retbaense DSM 5692, Desulfohalobium retbaense str. DSM 5692, Desulfohalobium retbaense strain DSM 5692
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