STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dret_1642KEGG: dde:Dde_3125 hypothetical protein. (492 aa)    
Predicted Functional Partners:
Dret_1882
KEGG: dde:Dde_0121 hypothetical protein.
  
     0.695
Dret_1643
Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp; KEGG: dma:DMR_38640 Crp family transcriptional regulator.
       0.584
Dret_1556
Putative phytochrome sensor protein; PFAM: GAF domain protein; SMART: GAF domain protein; KEGG: dde:Dde_1994 hypothetical protein.
  
     0.572
Dret_1640
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvm:DvMF_2713 4Fe-4S ferredoxin iron-sulfur binding domain protein.
       0.508
Dret_1641
PFAM: protein of unknown function DUF362; KEGG: dvm:DvMF_2714 protein of unknown function DUF362.
       0.508
Dret_2005
KEGG: dde:Dde_2592 hypothetical protein.
  
     0.444
Dret_0863
TIGRFAM: MJ0042 family finger-like protein; KEGG: dvu:DVU1589 hypothetical protein.
  
     0.415
Your Current Organism:
Desulfohalobium retbaense
NCBI taxonomy Id: 485915
Other names: D. retbaense DSM 5692, Desulfohalobium retbaense DSM 5692, Desulfohalobium retbaense str. DSM 5692, Desulfohalobium retbaense strain DSM 5692
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.