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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dret_1663KEGG: dma:DMR_21820 hypothetical protein. (76 aa)    
Predicted Functional Partners:
Dret_1662
TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; KEGG: dvm:DvMF_0153 acetolactate synthase, large subunit, biosynthetic type.
       0.811
Dret_1664
PFAM: protein of unknown function DUF167; KEGG: dvl:Dvul_1694 hypothetical protein; Belongs to the UPF0235 family.
       0.785
Dret_1349
SMART: TRASH domain protein; KEGG: dma:DMR_21990 hypothetical protein.
  
     0.703
Dret_1661
TIGRFAM: acetolactate synthase, small subunit; PFAM: Acetolactate synthase, small subunit-like; amino acid-binding ACT domain protein; KEGG: dma:DMR_21840 acetolactate synthase small subunit.
       0.693
Dret_1665
PFAM: protein of unknown function YGGT; KEGG: dvm:DvMF_0149 protein of unknown function YGGT.
 
     0.692
Dret_1951
TIGRFAM: MJ0042 family finger-like protein; PFAM: Protein of unknown function DUF2143; KEGG: dvu:DVU0859 hypothetical protein.
  
     0.674
Dret_1801
SMART: Tetratricopeptide repeat; KEGG: dvm:DvMF_3127 tetratricopeptide TPR_2 repeat protein.
  
     0.584
Dret_1666
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: dma:DMR_21780 haloacid dehalogenase-like hydrolase family protein.
 
     0.564
Dret_1075
TIGRFAM: metal dependent phophohydrolase; KEGG: dde:Dde_0365 metal dependent phosphohydrolase.
  
     0.559
Dret_1724
PFAM: YbbR family protein; KEGG: dma:DMR_25710 hypothetical protein.
  
     0.535
Your Current Organism:
Desulfohalobium retbaense
NCBI taxonomy Id: 485915
Other names: D. retbaense DSM 5692, Desulfohalobium retbaense DSM 5692, Desulfohalobium retbaense str. DSM 5692, Desulfohalobium retbaense strain DSM 5692
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