STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dret_1993KEGG: dvl:Dvul_1790 hypothetical protein. (161 aa)    
Predicted Functional Partners:
Dret_1994
PFAM: type II and III secretion system protein; KEGG: dal:Dalk_4815 type II and III secretion system protein.
       0.749
Dret_1991
Tfp pilus assembly protein ATPase PilM-like protein; KEGG: dvm:DvMF_1024 hypothetical protein.
       0.671
Dret_1992
KEGG: dvl:Dvul_1789 hypothetical protein.
       0.653
Dret_1995
PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; KEGG: dal:Dalk_4816 type II secretory pathway component ExeA (predicted ATPase)-like protein.
       0.634
Dret_1996
PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: dvm:DvMF_1028 type II secretion system protein E.
       0.578
Dret_1997
PFAM: Type II secretion system F domain; KEGG: dvm:DvMF_1029 type II secretion system protein.
       0.543
Your Current Organism:
Desulfohalobium retbaense
NCBI taxonomy Id: 485915
Other names: D. retbaense DSM 5692, Desulfohalobium retbaense DSM 5692, Desulfohalobium retbaense str. DSM 5692, Desulfohalobium retbaense strain DSM 5692
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.