STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dret_2265PFAM: Peptidase M23; KEGG: dde:Dde_2203 M24/M37 family peptidase. (299 aa)    
Predicted Functional Partners:
Dret_2158
PFAM: Peptidase M23; KEGG: dvl:Dvul_0922 peptidase M23B.
 
   
 0.751
Dret_0324
TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin- binding protein transpeptidase; KEGG: dde:Dde_3124 penicillin-binding protein 1A.
  
   
 0.665
Dret_0087
PFAM: Lytic transglycosylase catalytic; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; KEGG: dde:Dde_3580 peptidoglycan-binding LysM.
 
  
 0.561
Dret_2249
KEGG: dma:DMR_39450 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: Peptidase S24, S26A and S26B, conserved region; Belongs to the peptidase S26 family.
 
  
 0.518
Dret_2266
PFAM: protein of unknown function UPF0066; KEGG: dde:Dde_2646 hypothetical protein.
       0.484
Dret_0142
KEGG: dde:Dde_1370 N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin.
 
  
 0.436
mltG
Aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation.
  
  
 0.414
Your Current Organism:
Desulfohalobium retbaense
NCBI taxonomy Id: 485915
Other names: D. retbaense DSM 5692, Desulfohalobium retbaense DSM 5692, Desulfohalobium retbaense str. DSM 5692, Desulfohalobium retbaense strain DSM 5692
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