STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dret_2440PFAM: protein of unknown function DUF81; KEGG: dat:HRM2_12110 hypothetical protein. (567 aa)    
Predicted Functional Partners:
Dret_1305
KEGG: dal:Dalk_4628 hypothetical protein.
  
     0.705
Dret_0099
PFAM: Dual specificity protein phosphatase; SMART: Dual specificity phosphatase, subgroup, catalytic domain; KEGG: dde:Dde_0605 protein tyrosine phosphatase / dual specificity protein phosphatase.
  
   
 0.684
Dret_1194
PFAM: Auxin Efflux Carrier; KEGG: dat:HRM2_47110 putative permease.
  
     0.642
Dret_0229
KEGG: dvm:DvMF_2189 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein.
  
     0.557
Dret_0095
TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: dat:HRM2_09100 putative methyl-accepting chemotaxis protein.
  
   
 0.502
Dret_2439
KEGG: dat:HRM2_12100 hypothetical protein.
       0.500
Dret_0787
Putative transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; KEGG: dat:HRM2_35320 putative cyclic nucleotide- binding protein.
 
     0.489
Dret_2438
Hypothetical protein; KEGG: ret:RHE_PE00114 sugar ABC transporter, permease protein.
       0.483
Dret_0228
TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: dvl:Dvul_2728 phosphonate ABC transporter, periplasmic phosphonate-binding protein.
  
   
 0.461
Dret_0137
KEGG: dde:Dde_0372 hypothetical protein.
  
    0.447
Your Current Organism:
Desulfohalobium retbaense
NCBI taxonomy Id: 485915
Other names: D. retbaense DSM 5692, Desulfohalobium retbaense DSM 5692, Desulfohalobium retbaense str. DSM 5692, Desulfohalobium retbaense strain DSM 5692
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