STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dret_2457KEGG: dde:Dde_0635 tripartite ATP-independent periplasmic transporters, DctQ component, putative. (156 aa)    
Predicted Functional Partners:
Dret_2456
PFAM: Extracellular solute-binding protein, family 7, bacteria; KEGG: dde:Dde_0634 extracellular solute-binding protein.
 
  
 0.961
Dret_2458
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: dde:Dde_0636 TRAP dicarboxylate transporter- DctM subunit.
 
 
 0.957
Dret_2459
PFAM: pseudouridine synthase; RNA-binding S4 domain protein; KEGG: dma:DMR_38980 pseudouridine synthase; Belongs to the pseudouridine synthase RluA family.
       0.671
Dret_0559
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: dat:HRM2_46660 putative TRAP C4-dicarboxylate transport system permease DctM subunit.
 
 
 0.608
Dret_1324
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: dat:HRM2_43000 hypothetical protein.
  
     0.577
Dret_0557
PFAM: Extracellular solute-binding protein, family 7, bacteria; KEGG: dat:HRM2_46640 TRAP-type C4-dicarboxylate transport system periplasmic component.
 
  
 0.490
Dret_0072
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: dps:DP0487 DctM (C4-dicarboxylate permease, large subunit).
  
 
 0.478
Dret_2320
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; Citrate transporter; KEGG: tmz:Tmz1t_0543 TRAP dicarboxylate transporter, DctM subunit.
  
 
 0.478
Dret_0519
KEGG: dde:Dde_1794 hypothetical protein.
  
     0.421
Your Current Organism:
Desulfohalobium retbaense
NCBI taxonomy Id: 485915
Other names: D. retbaense DSM 5692, Desulfohalobium retbaense DSM 5692, Desulfohalobium retbaense str. DSM 5692, Desulfohalobium retbaense strain DSM 5692
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