STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dret_2477PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: dde:Dde_0628 DNA polymerase III, epsilon subunit. (233 aa)    
Predicted Functional Partners:
Dret_2471
KEGG: dde:Dde_0002 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain; SMART: DNA polymerase III beta chain.
  
 0.991
Dret_1396
KEGG: dvm:DvMF_0130 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; SMART: phosphoesterase PHP domain protein.
   
 0.990
dnaX
DNA polymerase III, subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
   
 0.974
Dret_2290
KEGG: dde:Dde_0177 DNA polymerase III, delta prime subunit, putative.
   
 0.974
Dret_1427
PFAM: DNA polymerase III delta; KEGG: dma:DMR_44680 hypothetical protein.
    
 0.960
Dret_2478
Putative CBS domain and cyclic nucleotide- regulated nucleotidyltransferase; PFAM: protein of unknown function DUF294 nucleotidyltransferase putative; Domain of unknown function DUF294, putative nucleotidyltransferase substrate-binding; cyclic nucleotide-binding; CBS domain containing protein; SMART: CBS domain containing protein; KEGG: dde:Dde_0629 cyclic nucleotide-binding domain- containing protein.
 
    0.909
Dret_2479
TIGRFAM: probable sodium symporter protein; PFAM: Na+/solute symporter; KEGG: dde:Dde_0630 sodium:solute symporter family protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
    0.737
Dret_2404
DNA polymerase I; KEGG: dvm:DvMF_1713 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; SMART: DNA-directed DNA polymerase; Helix-hairpin- helix domain protein class 2; 5'-3' exonuclease.
  
 
 0.601
Dret_2480
TIGRFAM: probable solute symporter protein; KEGG: hch:HCH_05071 hypothetical protein.
 
     0.588
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
  
  
 0.551
Your Current Organism:
Desulfohalobium retbaense
NCBI taxonomy Id: 485915
Other names: D. retbaense DSM 5692, Desulfohalobium retbaense DSM 5692, Desulfohalobium retbaense str. DSM 5692, Desulfohalobium retbaense strain DSM 5692
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