STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dret_2498KEGG: dvl:Dvul_0040 hypothetical protein. (199 aa)    
Predicted Functional Partners:
Dret_1302
PFAM: cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; SMART: AAA ATPase; KEGG: dma:DMR_23970 DNA translocase.
   
 
 0.891
Dret_1473
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pca:Pcar_2397 TonB-dependent receptor.
    
 
 0.872
Dret_1310
PFAM: protein of unknown function DUF255; KEGG: dvm:DvMF_2759 protein of unknown function DUF255.
    
 
 0.863
Dret_2497
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family.
       0.811
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 
 0.775
Dret_0563
TIGRFAM: type 1 secretion C-terminal target domain; outer membrane adhesin like proteiin; KEGG: cja:CJA_1396 putative hemolysin.
  
 
 0.759
Dret_1881
PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; KEGG: dal:Dalk_4398 peptidoglycan-binding LysM.
    
 
 0.758
Dret_2496
KEGG: dal:Dalk_4409 putative lipoprotein.
       0.738
Dret_2159
KEGG: dds:Ddes_0896 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; SMART: peptidase S41; PDZ/DHR/GLGF domain protein; Belongs to the peptidase S41A family.
  
   0.728
Dret_0028
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sfu:Sfum_2744 TonB-dependent receptor.
    
 
 0.693
Your Current Organism:
Desulfohalobium retbaense
NCBI taxonomy Id: 485915
Other names: D. retbaense DSM 5692, Desulfohalobium retbaense DSM 5692, Desulfohalobium retbaense str. DSM 5692, Desulfohalobium retbaense strain DSM 5692
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