STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_0024TIGRFAM: methyltransferase cognate corrinoid protein; PFAM: cobalamin B12-binding domain protein; Methionine synthase B12-binding module cap domain protein; KEGG: geo:Geob_2541 cobalamin B12-binding domain protein. (220 aa)    
Predicted Functional Partners:
Dtox_1276
PFAM: dihydropteroate synthase DHPS; KEGG: dal:Dalk_4910 methionine synthase.
  
 0.981
Dtox_0025
PFAM: Monomethylamine methyltransferase MtmB; Contains pyrrolysine.
    
  0.978
Dtox_0023
PFAM: Uroporphyrinogen decarboxylase (URO-D); KEGG: dal:Dalk_2920 cobalamin B12-binding domain protein; Belongs to the uroporphyrinogen decarboxylase family.
  
 0.957
Dtox_0026
PFAM: ferredoxin; KEGG: sit:TM1040_1226 ferredoxin.
 
    0.829
deoC
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.
   
 
 0.763
Dtox_2941
PFAM: homocysteine S-methyltransferase; cobalamin B12-binding domain protein; Methionine synthase B12- binding module cap domain protein; dihydropteroate synthase DHPS; KEGG: gsu:GSU2921 5-methyltetrahydrofolate- homocysteine methyltransferase, truncation.
 
  
0.695
Dtox_3083
Ferredoxin; KEGG: sfu:Sfum_0797 ferredoxin.
 
    0.641
Dtox_0534
PFAM: methylenetetrahydrofolate reductase; KEGG: dol:Dole_2330 methylenetetrahydrofolate reductase (NAD(P)H); Belongs to the methylenetetrahydrofolate reductase family.
 
  
 0.622
Dtox_1273
PFAM: ferredoxin; KEGG: dol:Dole_3100 ferredoxin.
 
    0.564
Dtox_2801
Hypothetical protein; KEGG: dat:HRM2_38940 putative uroporphyrinogen-III decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
 
  
 0.548
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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