STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_0068Hypothetical protein. (50 aa)    
Predicted Functional Partners:
Dtox_0069
PFAM: Radical SAM domain protein; KEGG: nar:Saro_3029 radical SAM family protein.
 
 
 
 0.982
Dtox_2994
PFAM: Radical SAM domain protein; KEGG: sfu:Sfum_2157 radical SAM domain protein.
 
 
 
 0.841
Dtox_0946
PFAM: Radical SAM domain protein; KEGG: nar:Saro_3029 radical SAM family protein.
 
 
 
 0.763
Dtox_0945
PFAM: Radical SAM domain protein; KEGG: nar:Saro_3029 radical SAM family protein.
 
 
 
 0.750
Dtox_0067
Hypothetical protein.
       0.594
Dtox_0202
Transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: gur:Gura_4161 GntR family transcriptional regulator.
  
     0.406
Dtox_1794
PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; multi antimicrobial extrusion protein MatE; KEGG: bsu:BSU27670 involved in spore cortex synthesis (stage V sporulation).
  
     0.405
Dtox_3035
PFAM: protein of unknown function DUF633; KEGG: bar:GBAA4513 hypothetical protein.
  
     0.401
Dtox_3234
PFAM: VanW family protein; KEGG: baa:BA_1185 hypothetical protein.
  
     0.400
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.