STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_0099PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: bar:GBAA4172 lysine decarboxylase. (509 aa)    
Predicted Functional Partners:
Dtox_3566
TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: baa:BA_0473 arginase family; Belongs to the arginase family.
 
  
 0.943
Dtox_2812
Agmatine deiminase; PFAM: Porphyromonas-type peptidyl-arginine deiminase; KEGG: sus:Acid_1556 peptidyl-arginine deiminase; Belongs to the agmatine deiminase family.
    
 0.920
Dtox_3976
PFAM: Orn/Lys/Arg decarboxylase major region; Soluble liver antigen/liver pancreas antigen; Orn/Lys/Arg decarboxylase domain protein; KEGG: bsu:BSU14630 arginine decarboxylase.
  
  
 
0.909
Dtox_3568
KEGG: sat:SYN_01365 pyruvoyl-dependent arginine decarboxylase; TIGRFAM: arginine decarboxylase, pyruvoyl- dependent; PFAM: Pyruvoyl-dependent arginine decarboxylase.
     
  0.900
speE
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
  
 0.825
argH
TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: pca:Pcar_2418 argininosuccinate lyase.
     
 0.814
Dtox_2133
PFAM: Aluminium resistance family protein; Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: bsu:BSU17440 hypothetical protein.
 
   
 0.711
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
  
    0.643
Dtox_0098
Hypothetical protein.
       0.523
Dtox_0069
PFAM: Radical SAM domain protein; KEGG: nar:Saro_3029 radical SAM family protein.
 
     0.433
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.