STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_0113TIGRFAM: sporulation peptidase YabG; PFAM: peptidase U57 YabG; KEGG: bha:BH0058 hypothetical protein. (293 aa)    
Predicted Functional Partners:
Dtox_2605
TIGRFAM: stage III sporulation protein AG; KEGG: bha:BH2791 mutants block sporulation after engulfment.
  
     0.691
Dtox_0109
PFAM: 3D domain protein; protein of unknown function DUF348; G5 domain protein; KEGG: bsu:BSU00400 hypothetical protein.
 
     0.672
Dtox_2607
TIGRFAM: stage III sporulation protein AE; KEGG: bar:GBAA4413 stage III sporulation protein AE.
  
   
 0.608
Dtox_2608
TIGRFAM: stage III sporulation protein AD; KEGG: bsu:BSU24400 mutants block sporulation after engulfment (stage III sporulation).
  
     0.576
Dtox_0114
KEGG: dat:HRM2_43210 hypothetical protein.
       0.568
Dtox_2111
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
   
 0.559
rsmA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
       0.552
Dtox_4011
Hypothetical protein.
  
     0.517
Dtox_2270
KEGG: bar:GBAA4621 hypothetical protein.
  
     0.510
gpr
Spore protease; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
  
 0.486
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.