STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_0116PFAM: protein of unknown function DUF169; KEGG: sfu:Sfum_3174 hypothetical protein. (265 aa)    
Predicted Functional Partners:
Dtox_0117
Hypothetical protein.
       0.773
Dtox_2083
PFAM: DSH domain protein; helicase domain protein; SMART: helicase domain protein; KEGG: translation repressor.
  
     0.539
Dtox_1015
PFAM: CBS domain-containing protein; SMART: CBS domain-containing protein; KEGG: dol:Dole_1341 response regulator receiver protein.
  
     0.469
Dtox_0118
KEGG: dal:Dalk_3067 CoA-substrate-specific enzyme activase; TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type.
       0.427
Dtox_0119
PFAM: 2-hydroxyglutaryl-CoA dehydratase D- component; KEGG: sfu:Sfum_3256 2-hydroxyglutaryl-CoA dehydratase, D-component.
       0.427
Dtox_0193
PFAM: Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM; KEGG: hypothetical protein.
  
     0.400
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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