STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_0174KEGG: dat:HRM2_16520 NADP-reducing hydrogenase, subunit B. (119 aa)    
Predicted Functional Partners:
Dtox_0175
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: dat:HRM2_16530 sensory signal transduction histidine kinase (ATPase domain protein).
 
   
 0.966
Dtox_0172
TIGRFAM: hydrogenase, Fe-only; PFAM: hydrogenase large subunit domain protein; iron hydrogenase small subunit; ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sfu:Sfum_0844 hydrogenases, Fe-only.
 
 
 0.962
Dtox_0178
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Fe-S cluster domain protein; KEGG: dat:HRM2_16550 iron-sulfur binding hydrogenase.
 
 
 
 0.942
Dtox_0176
PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: sfu:Sfum_0846 NADH dehydrogenase (ubiquinone), 24 kDa subunit.
 
 
 0.940
Dtox_0177
KEGG: dat:HRM2_16550 iron-sulfur binding hydrogenase.
 
   
 0.918
Dtox_0179
Putative anti-sigma regulatory factor, serine/threonine protein kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: dat:HRM2_16560 RsbW2.
 
   
 0.918
Dtox_0180
KEGG: dat:HRM2_16570 hypothetical protein.
 
   
 0.910
Dtox_0173
PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sfu:Sfum_0845 NADH dehydrogenase (quinone).
 
   
 0.908
Dtox_3829
TIGRFAM: hydrogenase, Fe-only; PFAM: hydrogenase large subunit domain protein; iron hydrogenase small subunit; ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sfu:Sfum_0844 hydrogenases, Fe-only.
 
 
 0.882
Dtox_3831
PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: pca:Pcar_1846 NADP-reducing hydrogenase chain A.
 
 
 0.734
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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