STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_0218TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase; Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: baa:BA_0644 tetrapyrrole (Corrin/Porphyrin) Methylases. (491 aa)    
Predicted Functional Partners:
Dtox_0220
PFAM: RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; KEGG: bha:BH0073 hypothetical protein.
  
    0.759
Dtox_0216
TIGRFAM: stage V sporulation protein T; transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: baa:BA_0642 hypothetical protein predicted by GeneMark.
      0.739
Dtox_0219
Histone family protein DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.
       0.673
recF
DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family.
  
   
 0.571
Dtox_0222
TIGRFAM: sporulation protein YabP; PFAM: YabP family protein; KEGG: bha:BH0074 hypothetical protein.
  
    0.522
Dtox_0215
PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: gsu:GSU2429 peptidyl-prolyl cis-trans isomerase domain-containing protein.
       0.510
pheT
TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; KEGG: bar:GBAA4803 phenylalanyl-tRNA synthetase subunit beta; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
 
   
 0.501
mfd
Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
     
 0.496
Dtox_0224
PFAM: Septum formation initiator; KEGG: bha:BH0076 cell-division initiation protein (septum formation).
 
     0.482
Dtox_0223
TIGRFAM: spore cortex biosynthesis protein YabQ; KEGG: bar:GBAA0058 hypothetical protein.
  
    0.476
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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