STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_0327KEGG: dat:HRM2_33640 putative SAM-dependent methyltransferase. (323 aa)    
Predicted Functional Partners:
Dtox_0328
PFAM: extracellular solute-binding protein family 5; KEGG: wsu:WS1160 oligopeptide binding protein.
 
     0.694
Dtox_1302
KEGG: sfu:Sfum_1719 hypothetical protein.
  
     0.664
Dtox_1614
KEGG: sfu:Sfum_4098 hypothetical protein.
  
     0.585
Dtox_1664
PFAM: metallophosphoesterase; KEGG: bha:BH2845 diadenosine tetraphosphatase.
   
   0.583
Dtox_1943
PFAM: Protein of unknown function DUF1638; KEGG: dat:HRM2_24360 hypothetical protein.
  
     0.579
Dtox_1693
KEGG: sfu:Sfum_4098 hypothetical protein.
  
     0.569
Dtox_2548
KEGG: dal:Dalk_0684 hypothetical protein.
  
     0.560
Dtox_1610
KEGG: dal:Dalk_2588 hypothetical protein.
  
     0.550
Dtox_1721
PFAM: Fe-S cluster domain protein; KEGG: dat:HRM2_28540 hypothetical protein.
  
     0.538
Dtox_0329
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: scl:sce4301 peptide ABC transporter, permease protein.
 
     0.536
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.