STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_0339Hypothetical protein. (208 aa)    
Predicted Functional Partners:
Dtox_0338
PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: swd:Swoo_3483 cobalamin synthesis protein P47K.
       0.773
Dtox_0333
PFAM: periplasmic solute binding protein; KEGG: dds:Ddes_1008 periplasmic solute binding protein.
  
  
 0.709
rpsZ
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
  
 
 0.680
Dtox_0337
PFAM: Protein of unknown function DUF1980; KEGG: baa:BA_2274 hypothetical protein.
       0.634
Dtox_0336
PFAM: permease; KEGG: bsu:BSU03250 hypothetical protein.
  
    0.629
Dtox_1126
Transcriptional regulator, TraR/DksA family; TIGRFAM: sporulation protein, yteA family; PFAM: zinc finger DksA/TraR C4-type; KEGG: bar:GBAA5114 DksA/TraR family DNA-binding protein.
  
  
 0.565
map
Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
    
   0.551
rpmB
TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; KEGG: gme:Gmet_2323 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.539
hisI
TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-ATP pyrophosphohydrolase; MazG nucleotide pyrophosphohydrolase; KEGG: bsu:BSU34860 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein; In the N-terminal section; belongs to the PRA-CH family.
     
 0.519
Dtox_4184
PFAM: periplasmic solute binding protein; KEGG: bsu:BSU02850 hypothetical protein; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.505
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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