STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_0343PFAM: extracellular solute-binding protein family 5; KEGG: wsu:WS1160 oligopeptide binding protein. (537 aa)    
Predicted Functional Partners:
Dtox_0344
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:pRL110455 putative substrate-binding component of ABC transporter.
   0.949
Dtox_0345
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: wsu:WS1158 hypothetical protein.
 
 0.948
Dtox_0346
KEGG: tbd:Tbd_1668 oligopeptidee ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
    0.910
Dtox_0329
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: scl:sce4301 peptide ABC transporter, permease protein.
   0.834
Dtox_0330
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dal:Dalk_0870 binding-protein-dependent transport systems inner membrane component.
 
 0.817
Dtox_0088
TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: eca:ECA2957 pyruvate-flavodoxin oxidoreductase.
  
    0.792
Dtox_0449
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: noc:Noc_2185 ABC transporter, inner membrane subunit.
   0.720
Dtox_0369
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH0568 nickel transport system (permease).
   0.689
Dtox_0350
TIGRFAM: nickel ABC transporter, permease subunit NikB; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: avi:Avi_7614 nickel ABC transporter permease subunit NikB.
   0.682
Dtox_0538
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH0568 nickel transport system (permease).
   0.682
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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