STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_0490PFAM: VanZ family protein; KEGG: bar:GBAA0962 hypothetical protein. (242 aa)    
Predicted Functional Partners:
Dtox_0489
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bar:GBAA5105 sensor histidine kinase.
  
     0.669
Dtox_0497
PFAM: extracellular solute-binding protein family 1; KEGG: hypothetical protein.
  
     0.654
Dtox_0491
PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: wsu:WS0721 penicillin-binding protein; Belongs to the peptidase S11 family.
 
     0.642
Dtox_2628
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: bar:GBAA3373 DNA-binding protein.
  
     0.609
Dtox_3136
PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: dal:Dalk_2340 metal dependent phosphohydrolase.
  
     0.589
Dtox_2058
KEGG: dal:Dalk_2888 hypothetical protein.
  
     0.567
Dtox_1719
KEGG: bha:BH1193 hypothetical protein.
  
     0.499
Dtox_1575
PFAM: alpha/beta hydrolase fold; KEGG: bsu:BSU10900 hypothetical protein.
  
     0.446
Dtox_0357
KEGG: pca:Pcar_0880 hypothetical protein.
  
     0.444
Dtox_0623
PFAM: protein of unknown function DUF291; KEGG: bcm:Bcenmc03_6355 outer membrane autotransporter.
  
     0.430
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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