STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_0531KEGG: pca:Pcar_1582 hypothetical protein. (107 aa)    
Predicted Functional Partners:
Dtox_1234
PFAM: Cobyrinic acid ac-diamide synthase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dol:Dole_0576 cobyrinic acid ac-diamide synthase.
 
     0.780
Dtox_1233
PFAM: Cobyrinic acid ac-diamide synthase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dol:Dole_0577 cobyrinic acid ac-diamide synthase.
 
     0.779
Dtox_1235
PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: dol:Dole_0581 dinitrogenase iron-molybdenum cofactor biosynthesis protein.
 
     0.722
Dtox_0367
PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: dat:HRM2_46890 hypothetical protein.
 
     0.645
Dtox_0530
KEGG: bph:Bphy_0035 peptide deformylase.
       0.558
Dtox_1231
PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: hsm:HSM_0813 periplasmic solute binding protein.
 
     0.531
Dtox_0532
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dal:Dalk_3511 4Fe-4S ferredoxin iron-sulfur binding domain protein.
       0.508
Dtox_3450
KEGG: dol:Dole_0215 hypothetical protein.
  
     0.498
Dtox_0233
PFAM: protein of unknown function DUF134; KEGG: dat:HRM2_31170 hypothetical protein; Belongs to the UPF0251 family.
 
     0.479
Dtox_1747
PFAM: beta-lactamase domain protein; KEGG: glo:Glov_3463 beta-lactamase domain protein.
 
     0.451
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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