STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_0538PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH0568 nickel transport system (permease). (311 aa)    
Predicted Functional Partners:
Dtox_0539
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH0569 nickel transport system (permease).
 
 0.996
Dtox_0540
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH0350 oligopeptide ABC transporter ATP- binding protein.
 
 0.962
Dtox_0541
Oligopeptide/dipeptide ABC transporter, ATPase subunit; KEGG: aha:AHA_3428 oligopeptide transport ATP- binding protein AppF; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
 0.959
Dtox_0542
PFAM: extracellular solute-binding protein family 5; KEGG: bha:BH0567 nickel transport system (nickel- binding protein).
   0.956
Dtox_0349
TIGRFAM: nickel ABC transporter, permease subunit NikC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH0569 nickel transport system (permease).
  
 0.902
Dtox_0360
PFAM: extracellular solute-binding protein family 5; KEGG: bar:GBAA4729 solute-binding family 5 protein.
   0.902
Dtox_0448
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bar:GBAA4731 oligopeptide ABC transporter, oligopeptide-binding protein.
  
 0.893
Dtox_0370
TIGRFAM: nickel ABC transporter, permease subunit NikC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH0569 nickel transport system (permease).
  
 0.888
Dtox_0365
PFAM: extracellular solute-binding protein family 5; KEGG: bha:BH0031 oligopeptide ABC transporter (oligopeptide-binding protein).
   0.879
Dtox_0330
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dal:Dalk_0870 binding-protein-dependent transport systems inner membrane component.
  
 0.875
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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