STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_0585PFAM: GerA spore germination protein; KEGG: bsu:BSU03700 germination response to the combination of glucose, fructose, L-asparagine, and KCl. (552 aa)    
Predicted Functional Partners:
Dtox_0584
TIGRFAM: germination protein, Ger(x)C family; PFAM: spore germination B3 GerAC family protein; KEGG: bha:BH1935 spore germination protein KC.
  
 0.959
Dtox_0781
TIGRFAM: spore germination protein; PFAM: Spore germination protein; KEGG: bha:BH1936 spore germination protein KB.
 
  
 0.806
Dtox_2380
TIGRFAM: stage V sporulation protein AD; PFAM: Stage V sporulation AD family protein; KEGG: baa:BA_0234 hypothetical protein.
  
  
 0.796
Dtox_1068
TIGRFAM: stage II sporulation protein R; KEGG: bsu:BSU36970 required for processing of pro- sigma-E.
 
    0.786
Dtox_2381
TIGRFAM: stage V sporulation protein AC; PFAM: SpoVA protein; KEGG: baa:BA_0233 hypothetical protein.
  
  
 0.786
Dtox_2565
TIGRFAM: spore germination protein; PFAM: Spore germination protein; KEGG: bha:BH1936 spore germination protein KB.
 
  
 0.782
gpr
Spore protease; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
  
 0.779
Dtox_2379
TIGRFAM: stage V sporulation protein AE; PFAM: SpoVA protein; KEGG: bha:BH1570 sporulation protein.
  
  
 0.779
Dtox_2711
TIGRFAM: spore germination protein; PFAM: Spore germination protein; KEGG: bsu:BSU03720 germination response to the combination of glucose, fructose, L-asparagine, and KCl.
 
  
 0.776
Dtox_2578
KEGG: bar:GBAA4396 stage IV sporulation protein B; TIGRFAM: stage IV sporulation protein B; PFAM: peptidase S55 SpoIVB; SMART: PDZ/DHR/GLGF domain protein.
  
     0.775
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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