STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_0627Hypothetical protein; KEGG: sfu:Sfum_3987 peptidase S24, S26A and S26B. (159 aa)    
Predicted Functional Partners:
Dtox_0626
KEGG: sfu:Sfum_3985 hypothetical protein.
       0.781
Dtox_0625
Hypothetical protein; KEGG: sfu:Sfum_2373 HPr kinase.
       0.778
Dtox_0623
PFAM: protein of unknown function DUF291; KEGG: bcm:Bcenmc03_6355 outer membrane autotransporter.
       0.543
Dtox_0624
Hypothetical protein.
       0.543
Dtox_0628
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
       0.482
Dtox_0629
PFAM: plasmid stabilization system; KEGG: ccv:CCV52592_0926 prophage LambdaSa04, RelE/ParE family protein.
       0.482
Dtox_2674
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Methyltransferase type 12; Non-ribosomal peptide synthetase; condensation domain protein; KEGG: pfl:PFL_3492 pyochelin synthetase F.
  
  
 0.458
Dtox_0622
KEGG: gme:Gmet_2500 hypothetical protein.
       0.444
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.