STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_0641PFAM: protein of unknown function UPF0157; GCN5- related N-acetyltransferase; KEGG: geo:Geob_2091 protein of unknown function UPF0157. (347 aa)    
Predicted Functional Partners:
Dtox_0640
Hypothetical protein.
       0.773
Dtox_0639
Hypothetical protein.
       0.605
Dtox_0642
KEGG: bar:GBAA2949 hypothetical protein.
  
    0.575
Dtox_0643
Hypothetical protein.
       0.558
Dtox_1922
Transcriptional regulator, AraC family; PFAM: transcription activator effector binding; helix-turn-helix- domain-containing protein AraC type; SMART: helix-turn-helix- domain-containing protein AraC type; KEGG: bsu:BSU05170 hypothetical protein.
 
     0.514
rnhB
Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
   
    0.467
Dtox_0637
Hypothetical protein.
       0.434
Dtox_0638
Hypothetical protein.
       0.434
queH
Protein of unknown function DUF208; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr).
 
      0.434
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.