STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_0725KEGG: gsu:GSU0139 hypothetical protein. (171 aa)    
Predicted Functional Partners:
Dtox_0726
Diguanylate cyclase; KEGG: dat:HRM2_39450 GGDEF domain family protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain-containing protein; SMART: GGDEF domain-containing protein.
       0.613
Dtox_0435
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: gsu:GSU2670 LuxR family transcriptional regulator.
  
     0.559
Dtox_2869
PFAM: virulence plasmid 28.1 kDa A protein; KEGG: scl:sce8561 putative toxin subunit.
 
     0.533
Dtox_1252
TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: dal:Dalk_4009 uroporphyrin-III C- methyltransferase.
     
 0.498
Dtox_1849
TIGRFAM: phage minor structural protein; KEGG: bha:BH0962 hypothetical protein.
  
     0.492
Dtox_2868
TIGRFAM: YD repeat protein; PFAM: virulence plasmid 65kDa B protein; YD repeat- containing protein; KEGG: reh:H16_B1352 insecticidal toxin complex protein.
  
     0.476
Dtox_3404
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: gbm:Gbem_2628 transcriptional regulator, MarR family.
  
     0.402
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.