STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_0794Hydrogenase 4, membrane subunit; PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: efe:EFER_0689 hydrogenase 4, membrane subunit. (489 aa)    
Predicted Functional Partners:
Dtox_0795
Hydrogenase, large subunit-like protein; PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: yen:YE2804 hydrogenase-4 component G.
 
 0.999
Dtox_0796
Hydrogenase, small subunit-like protein; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: afw:Anae109_3786 NADH ubiquinone oxidoreductase 20 kDa subunit.
 
 
 0.998
Dtox_0792
Hydrogenase, membrane subunit; KEGG: xau:Xaut_0167 respiratory-chain NADH dehydrogenase, subunit 1.
 
 
 0.992
Dtox_0793
Hydrogenase 4, membrane component; KEGG: bxe:Bxe_B0327 hypothetical protein.
 
  
 0.980
Dtox_1213
TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; KEGG: baa:BA_0388 oxidored_q1, NADH- Ubiquinone/plastoquinone (complex I), various chains.
 
 
0.948
Dtox_0791
Hydrogenase, membrane subunit; PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: yen:YE2799 hydrogenase 4 subunit B.
 
    
0.853
nuoB
NADH-quinone oxidoreductase, B subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
 
 
 
 0.699
Dtox_3830
PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dat:HRM2_16600 NuoF.
  
 
 0.627
nuoD
NADH dehydrogenase I, D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family.
 
 
   0.618
Dtox_0088
TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: eca:ECA2957 pyruvate-flavodoxin oxidoreductase.
  
 
 0.564
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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