STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_0935RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: bsu:BSU01730 RNA polymerase sigma factor SigW; Belongs to the sigma-70 factor family. ECF subfamily. (180 aa)    
Predicted Functional Partners:
Dtox_0936
Hypothetical protein.
       0.757
Dtox_3616
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: sdn:Sden_2772 RNA polymerase sigma factor AlgU; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.735
Dtox_0933
Putative anti-sigma regulatory factor, serine/threonine protein kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: dat:HRM2_02110 predicted anti-sigma F protein (E-sigma F).
 
    0.734
Dtox_0934
PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; KEGG: sfu:Sfum_2012 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding.
 
     0.727
Dtox_0502
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: bha:BH0263 RNA polymerase sigma factor SigW; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.718
Dtox_0938
PFAM: secretion protein HlyD family protein; KEGG: mno:Mnod_0405 membrane-fusion protein.
 
     0.717
Dtox_0937
PFAM: Extracellular ligand-binding receptor; KEGG: gsu:GSU3401 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein, putative.
       0.712
Dtox_0377
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: pla:Plav_0951 ECF subfamily RNA polymerase sigma-24 factor.
  
     0.705
Dtox_0932
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: dal:Dalk_1049 anti-sigma-factor antagonist.
  
    0.696
Dtox_0931
Hypothetical protein; KEGG: dat:HRM2_37980 putative H(+)-antiporter protein (permease of the major facilitator superfamily).
  
    0.692
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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