STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_0940PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: met:M446_0091 ABC transporter related. (908 aa)    
Predicted Functional Partners:
Dtox_0938
PFAM: secretion protein HlyD family protein; KEGG: mno:Mnod_0405 membrane-fusion protein.
 
 
 0.942
Dtox_0939
PFAM: ABC transporter related; peptidase C39 bacteriocin processing; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: mno:Mnod_0406 ABC transporter related.
 
    
0.784
Dtox_1866
Hypothetical protein; KEGG: sfu:Sfum_3184 replicative DNA helicase.
  
     0.607
Dtox_2850
Hypothetical protein; KEGG: aba:Acid345_0662 parallel beta-helix repeat protein.
  
  
 0.589
Dtox_0933
Putative anti-sigma regulatory factor, serine/threonine protein kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: dat:HRM2_02110 predicted anti-sigma F protein (E-sigma F).
 
     0.574
Dtox_2853
KEGG: afw:Anae109_2634 hypothetical protein.
  
     0.567
Dtox_0937
PFAM: Extracellular ligand-binding receptor; KEGG: gsu:GSU3401 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein, putative.
 
     0.561
Dtox_0935
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: bsu:BSU01730 RNA polymerase sigma factor SigW; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.557
Dtox_0932
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: dal:Dalk_1049 anti-sigma-factor antagonist.
 
    0.554
Dtox_3913
KEGG: sat:SYN_01895 putative cytoplasmic protein.
  
     0.543
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.