STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_0987PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: gur:Gura_2198 hypothetical protein. (411 aa)    
Predicted Functional Partners:
Dtox_0988
D-lactate dehydrogenase (cytochrome); PFAM: FAD linked oxidase domain protein; KEGG: dps:DP0059 glycolate oxidase subunit (GlcD).
 
 0.999
Dtox_0989
KEGG: gsu:GSU3295 hypothetical protein.
      0.600
Dtox_0096
TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvl:Dvul_0348 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein.
  
  
 0.547
Dtox_0088
TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: eca:ECA2957 pyruvate-flavodoxin oxidoreductase.
  
  
 0.546
Dtox_1355
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dal:Dalk_5062 4Fe-4S ferredoxin iron-sulfur binding domain protein.
  
 
 0.507
Dtox_2921
PFAM: protein of unknown function DUF1121; KEGG: gur:Gura_4126 hypothetical protein.
  
 
 0.499
Dtox_2127
PFAM: histone deacetylase superfamily; KEGG: sat:SYN_02870 histone deacetylase domain- containing protein.
  
     0.446
Dtox_1356
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sfu:Sfum_1971 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
   
 
 0.435
Dtox_3138
PFAM: protein of unknown function DUF1121; KEGG: dal:Dalk_2774 protein of unknown function DUF1121.
   
 
 0.435
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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