STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_1073PFAM: Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM; KEGG: bbr:BB3018 putative peptidase. (221 aa)    
Predicted Functional Partners:
Dtox_1072
Anaerobic ribonucleoside-triphosphate reductase activating protein; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine.
 
     0.600
Dtox_3049
Hypothetical protein.
  
     0.566
Dtox_0223
TIGRFAM: spore cortex biosynthesis protein YabQ; KEGG: bar:GBAA0058 hypothetical protein.
  
     0.563
Dtox_0786
Hypothetical protein.
  
     0.521
Dtox_2357
KEGG: bsu:BSU24440 hypothetical protein.
  
     0.484
Dtox_3600
PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: bpy:Bphyt_5562 transport-associated.
  
     0.474
Dtox_0155
KEGG: mxa:MXAN_7292 hypothetical protein.
  
     0.467
Dtox_2103
PFAM: protein of unknown function DUF1614; KEGG: bra:BRADO6889 hypothetical protein.
  
     0.460
Dtox_1071
KEGG: cla:Cla_0048 anaerobic ribonucleoside triphosphate reductase; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase; PFAM: ATP-cone domain protein; SMART: Hedgehog/intein hint domain protein.
 
    0.458
Dtox_1238
PFAM: Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM; KEGG: mxa:MXAN_7387 chitinase, class I.
  
     0.443
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.