STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_1091TIGRFAM: spore coat protein, CotS family; KEGG: bsu:BSU30900 spore coat protein. (331 aa)    
Predicted Functional Partners:
Dtox_1092
PFAM: glycosyl transferase group 1; KEGG: bsu:BSU30910 spore coat protein.
 
    0.933
Dtox_1090
TIGRFAM: spore coat protein, CotS family; PFAM: aminoglycoside phosphotransferase; KEGG: bsu:BSU30920 hypothetical protein.
 
   
0.763
Dtox_2549
PFAM: protein of unknown function DUF81; KEGG: sfu:Sfum_2931 protein of unknown function DUF81.
  
     0.520
Dtox_1981
PFAM: Ig domain protein group 2 domain protein; SMART: Ig domain protein group 2 domain protein; KEGG: surface antigen BspA-like.
  
     0.480
Dtox_3350
ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein; KEGG: bar:GBAA5036 ABC transporter substrate- binding protein.
  
    0.473
Dtox_2068
KEGG: bsu:BSU23400 sporulation protein VAE.
  
     0.466
Dtox_1987
KEGG: glycoprotein (predicted).
  
     0.448
Dtox_2681
PFAM: S-layer domain protein; cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: hypothetical protein.
  
     0.429
Dtox_2637
KEGG: dol:Dole_0758 hypothetical protein.
  
     0.402
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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