STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_1125Hypothetical protein. (98 aa)    
Predicted Functional Partners:
Dtox_1126
Transcriptional regulator, TraR/DksA family; TIGRFAM: sporulation protein, yteA family; PFAM: zinc finger DksA/TraR C4-type; KEGG: bar:GBAA5114 DksA/TraR family DNA-binding protein.
 
     0.892
Dtox_3258
PFAM: membrane protein of unknown function; KEGG: aca:ACP_1958 hypothetical protein.
  
     0.757
Dtox_3962
SMART: PDZ/DHR/GLGF domain protein; KEGG: bha:BH3598 hypothetical protein.
  
     0.710
Dtox_1115
KEGG: bha:BH0549 hypothetical protein.
 
     0.703
Dtox_2600
Hypothetical protein.
  
     0.683
Dtox_3744
Putative transcriptional regulator, CopG family; PFAM: CopG domain protein DNA-binding domain protein; KEGG: bha:BH0521 hypothetical protein.
  
     0.625
Dtox_2105
KEGG: bar:GBAA2652 hypothetical protein.
  
     0.608
Dtox_2692
Hypothetical protein.
  
     0.575
Dtox_0223
TIGRFAM: spore cortex biosynthesis protein YabQ; KEGG: bar:GBAA0058 hypothetical protein.
  
     0.562
Dtox_0675
PFAM: S-layer domain protein; KEGG: hypothetical protein.
  
     0.553
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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