STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_1147KEGG: dol:Dole_0381 hypothetical protein. (146 aa)    
Predicted Functional Partners:
Dtox_3961
KEGG: dal:Dalk_3711 hypothetical protein.
 
     0.836
Dtox_0086
TIGRFAM: regulatory protein, FmdB family; KEGG: dal:Dalk_1639 regulatory protein, FmdB family.
  
     0.476
Dtox_1148
PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: sus:Acid_6714 cobalamin (vitamin B12) biosynthesis CbiM protein.
       0.449
Dtox_1149
Hypothetical protein; KEGG: pca:Pcar_0061 ABC-type transport system, permease component.
       0.442
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.