STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_1437PFAM: transposase IS66; KEGG: mgm:Mmc1_2184 transposase IS66. (464 aa)    
Predicted Functional Partners:
Dtox_1438
PFAM: IS66 Orf2 family protein; KEGG: dat:HRM2_43710 transposase.
 
     0.913
Dtox_1434
PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: reh:PHG058 putative integrase/recombinase; Belongs to the 'phage' integrase family.
  
    0.572
Dtox_1435
PFAM: integrase family protein; KEGG: dat:HRM2_26350 predicted phage-specific integrase.
  
    0.572
Dtox_1436
PFAM: integrase family protein; KEGG: avi:Avi_8262 integrase/recombinase; Belongs to the 'phage' integrase family.
  
    0.572
Dtox_1439
Hypothetical protein.
       0.489
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.