STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_1465PFAM: 2-hydroxyglutaryl-CoA dehydratase D- component; KEGG: gbm:Gbem_2040 2-hydroxyglutaryl-CoA dehydratase D-component. (369 aa)    
Predicted Functional Partners:
Dtox_1468
CoA-substrate-specific enzyme activase; KEGG: gsu:GSU2520 (R)-2-hydroxyglutaryl-CoA dehydratase activator; TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type.
 
 0.953
Dtox_0118
KEGG: dal:Dalk_3067 CoA-substrate-specific enzyme activase; TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type.
 
 0.934
Dtox_3624
TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: gur:Gura_0484 putative CoA-substrate-specific enzyme activase.
 
 0.900
Dtox_3077
PFAM: SirA family protein; KEGG: gsu:GSU2521 hypothetical protein; Belongs to the sulfur carrier protein TusA family.
 
    0.749
Dtox_1620
PFAM: SirA family protein; KEGG: sfu:Sfum_3402 SirA family protein; Belongs to the sulfur carrier protein TusA family.
 
    0.575
Dtox_2076
TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: gur:Gura_1539 putative CoA-substrate-specific enzyme activase.
 
 0.573
Dtox_1647
TIGRFAM: selenocysteine-specific translation elongation factor; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; Elongation factor SelB winged helix 3; Elongation factor SelB winged helix 2; elongation factor Tu domain 2 protein; KEGG: sfu:Sfum_1220 selenocysteine-specific translation elongation factor.
  
     0.521
Dtox_1464
TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: noc:Noc_0388 IS891/IS1136/IS1341 transposase.
       0.460
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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