STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_1506Hypothetical protein. (393 aa)    
Predicted Functional Partners:
Dtox_1504
KEGG: mxa:MXAN_1821 hypothetical protein.
 
     0.909
Dtox_1505
PFAM: AIG2 family protein; KEGG: pub:SAR11_1133 hypothetical protein.
 
     0.893
Dtox_3964
PFAM: Peptidase M23; KEGG: bha:BH3600 cell wall-binding protein.
 
    
 0.893
Dtox_1502
Type IV secretory pathway VirB4 protein-like protein; KEGG: bar:GBAA_pXO2_0008 hypothetical protein.
 
     0.789
Dtox_1507
Hypothetical protein.
       0.787
Dtox_1486
Hypothetical protein; KEGG: dat:HRM2_30920 ParA.
 
     0.776
Dtox_1514
PFAM: TRAG family protein; KEGG: pna:Pnap_2530 TraG family protein.
  
     0.774
Dtox_1484
PFAM: peptidase A24A prepilin type IV; KEGG: bsu:BSU28070 DNA-binding protein.
  
     0.773
Dtox_1478
Hypothetical protein.
  
     0.770
Dtox_1481
Hypothetical protein.
  
     0.769
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.