STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_1517PFAM: major facilitator superfamily MFS_1; KEGG: plu:plu4882 hypothetical protein. (412 aa)    
Predicted Functional Partners:
Dtox_1518
ABC transporter related; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.
       0.709
Dtox_1516
Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: bha:BH3675 MerR family transcriptional regulator.
 
     0.583
Dtox_2628
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: bar:GBAA3373 DNA-binding protein.
  
     0.552
Dtox_2675
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Non- ribosomal peptide synthetase; phosphopantetheine-binding; condensation domain protein; KEGG: dde:Dde_1609 amino acid adenylation; Belongs to the ATP-dependent AMP-binding enzyme family.
 
 
  
 0.536
Dtox_3139
PFAM: major facilitator superfamily MFS_1; KEGG: bar:GBAA2628 permease, putative.
  
     0.535
Dtox_2791
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH1900 ABC transporter ATP-binding protein.
  
     0.467
Dtox_2574
KEGG: bsu:BSU27130 hypothetical protein.
  
     0.439
Dtox_2674
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Methyltransferase type 12; Non-ribosomal peptide synthetase; condensation domain protein; KEGG: pfl:PFL_3492 pyochelin synthetase F.
 
  
 0.427
Dtox_1922
Transcriptional regulator, AraC family; PFAM: transcription activator effector binding; helix-turn-helix- domain-containing protein AraC type; SMART: helix-turn-helix- domain-containing protein AraC type; KEGG: bsu:BSU05170 hypothetical protein.
  
   
 0.425
Dtox_0931
Hypothetical protein; KEGG: dat:HRM2_37980 putative H(+)-antiporter protein (permease of the major facilitator superfamily).
 
     0.418
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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